Вопрос жизни. Энергия, эволюция и происхождение сложности - Лейн Николас

Вирусная инфекция и клеточная смерть

Bidle, K. D., and P. G. Falkowski Cell death in planktonic, photosynthetic microorganisms // Nature Reviews Microbiology 2: 643–655 (2004).

Lane, N. Origins of death // Nature 453: 583–585 (2008).

Refardt, D., Bergmiller, T., and R. Kümmerli Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection // Proc. R. Soc. B 280: 20123035 (2013).

Vardi, A., Formiggini, F., Casotti, R., De Martino, A., Ribalet, F., Miralto, A., and C. Bowler A stress surveillance system based on calcium and nitroc oxide in marine diatoms // PLoS Biology 4 (3): e60 (2006).

Соотношение площади поверхности и объема у бактерий

Fenchel, T., and B. J. Finlay Respiration rates in heterotrophic, free-living protozoa // Microbial Ecology 9: 99–122 (1983).

Harold, F. The Vital Force: a Study of Bioenergetics. W. H. Freeman, New York (1986).

Lane, N., and W. Martin The energetics of genome complexity // Nature 467: 929–934 (2010).

Lane, N. Energetics and genetics across the prokaryote-eukaryote divide // Biology Direct 6: 35 (2011).

Makarieva, A. M., Gorshkov, V. G., and B. L. Li Energetics of the smallest: do bacteria breathe at the same rate as whales? // Proc. R. Soc. B 272: 2219–2224 (2005).

Vellai, T., and G. Vida The origin of eukaryotes: the difference between prokaryotic and eukaryotic cells // Proc. R. Soc. B 266: 1571–1577 (1999).

Гигантские бактерии

Angert, E. R. DNA replication and genomic architecture of very large bacteria // Annual Review Microbiology 66: 197–212 (2012).

Mendell, J. E., Clements, K. D., Choat, J. H., and E. R. Extreme polyploidy in a large bacterium // Proceedings National Academy Sciences USA 105: 6730–6734 (2008).

Schulz, H. N., and B. B. Jorgensen Big bacteria // Annual Review Microbiology 55: 105–137 (2001).

Schulz, H. N. The genus Thiomargarita // Prokaryotes 6: 1156–1163 (2006).

Незначительная величина геномов эндосимбионтов и как это сказывается на энергии

Gregory, T. R., and R. DeSalle Comparative genomics in prokaryotes / In: The Evolution of the Genome. Gregory, T. R., ed. Elsevier, San Diego, pp. 585–575 (2005).

Lane, N., and W. Martin The energetics of genome complexity // Nature 467: 929–934 (2010).

Lane, N. Bioenergetic constraints on the evolution of complex life // Cold Spring Harbor Perspectives in Biology, doi: 10.1101/cshperspect.a015982 (2014).

Эндосимбионты в бактериях

Dohlen, C. D. von, Kohler, S., Alsop, S. T., and W. R. McManus Mealybug beta-proteobacterial symbionts contain gamma-proteobacterial symbionts // Nature 412: 433–436 (2001).

Почему у митохондрий сохранились собственные гены

Alberts, A., Johnson, A., Lewis, J., Raff, M., Roberts, K., and P. Walter Molecular Biology of the Cell. 5th edn. Garland Science, New York (2008).

Allen, J. F. Control of gene expression by redox potential and the requirement for chloroplast and mitochondrial genomes // Journal of Theoretical Biology 165: 609–631 (1993).

Allen, J. F. The function of genomes in bioenergetic organelles // Phil. Trans. R. Soc. B 358: 19–37 (2003).

Gray, M. W., Burger, G., and B. F. Lang Mitochondrial evolution // Science 283: 1476–1481 (1999).

Grey, A. D. de Forces maintaining organellar genomes: is any as strong as genetic code disparity or hydrophobicity? // BioEssays 27: 436–446 (2005).

Полиплоидия у цианобактерий

Griese, M., Lange, C., and J. Soppa Ploidy in cyanobacteria // FEMS Microbiology Letters 323: 124–131 (2011).

Почему на пластиды действуют те же энергетические ограничения, что на бактерии

Lane, N. Bioenergetic constraints on the evolution of complex life // Cold Spring Harbor Perspectives in Biology, doi: 10.1101/cshperspect.a015982 (2014).

Lane, N. Energetics and genetics across the prokaryote-eukaryote divide // Biology Direct 6: 35 (2011).

Конфликт направлений действия естественного отбора на разных уровнях и решение этой проблемы в рамках эндосимбиоза

Blackstone, N. W. Why did eukaryotes evolve only once? Genetic and energetic aspects of conflict and conflict mediation // Phil. Trans. R. Soc. B 368: 20120266 (2013).

Martin, W., and M. Müller The hydrogen hypothesis for the first eukaryote // Nature 392: 37–41 (1998).

Бактерии и использование энергии

Russell, J. B. The energy spilling reactions of bacteria and other organisms // Journal of Molecular Microbiology and Biotechnology 13: 1–11 (2007).

Глава 6.

Половое размножение и происхождение смерти

Скорость эволюции

Conway-Morris, S. The Cambrian “explosion”: Slow-fuse or megatonnage? // Proceedings National Academy Sciences USA 97: 4426–4429 (2000).

Gould, S. J., and N. Eldredge Punctuated equilibria: the tempo and mode of evolution reconsidered // Paleobiology 3: 115–151 (1977).

Nilsson, D.-E., and S. Pelger A pessimistic estimate of the time required for an eye to evolve // Proc. R. Soc. B 256: 53–58 (1994).

Половое размножение и структура популяции

Lahr, D. J., Parfrey, L. W., Mitchell, E. A., Katz, L. A., and E. Lara The chastity of amoeba: re-evaluating evidence for sex in amoeboid organisms // Proc. R. Soc. B 278: 2081–2090 (2011).

Maynard-Smith, J. The Evolution of Sex. Cambridge University Press, Cambridge (1978).

Ramesh, M. A., Malik, S. B., and J. M. Logsdon A phylogenomic inventory of meiotic genes: evidence for sex in Giardia and an early eukaryotic origin of meiosis // Current Biology 15: 185–191 (2005).

Takeuchi, N., Kaneko, K., and E. V. Koonin Horizontal gene transfer can rescue prokaryotes from Muller’s ratchet: benefit of DNA from dead cells and population subdivision // Genes Genomes Genetics 4: 325–339 (2014).

Происхождение интронов