Вопрос жизни. Энергия, эволюция и происхождение сложности - Лейн Николас

Питер Митчелл и хемиосмотическое сопряжение

Lane, N. Why are cells powered by proton gradients? // Nature Education 3: 18 (2010).

Mitchell, P. Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism // Nature 191: 144–148 (1961).

Orgell, L. E. Are you serious, Dr Mitchell? // Nature 402: 17 (1999).

Глава 1. Что такое жизнь?

Вероятность возникновения жизни и ее свойства

Conway-Morris, S. J. Life’s Solution: Inevitable Humans in a Lonely Universe. Cambridge University Press, Cambridge (2003).

Duve, C. de Life Evolving: Molecules, Mind, and Meaning. Oxford University Press, Oxford (2002).

Duve, C. de Singularities: Landmarks on the Pathways of Life. Cambridge University Press, Cambridge (2005).

Gould, S. J. Wonderful Life. The Burgess Shale and the Nature of History. W. W. Norton, New York (1989).

Maynard Smith, J., and E. Szathmáry The Major Transitions in Evolution. Oxford University Press, Oxford (1995).

Monod, J. Chance and Necessity. Alfred A. Knopf, New York (1971).

Основы молекулярной биологии

Cobb, M. 1953: When genes became information // Cell 153: 503–506 (2013).

Cobb, M. Life’s Greatest Secret: The Story of the Race to Crack the Genetic Code. Profile, London (2015).

Schrödinger, E. What is Life? Cambridge University Press, Cambridge (1944).

Watson, J. D., and F. H. C. Crick Genetical implications of the structure of deoxyribonucleic acid // Nature 171: 964–967 (1953).

Размер и структура генома

Doolittle, W. F. Is junk DNA bunk? A critique of ENCODE // Proceedings National Academy Sciences USA 110: 5294–5300 (2013).

Grauer, D., Zheng, Y., Price, N., Azevedo, R. B. R., Zufall, R. A., and E. Elhaik On the immortality of television sets: “functions” in the human genome according to the evolution-free gospel of ENCODE // Genome Biology and Evolution 5: 578–590 (2013).

Gregory, T. R. Synergy between sequence and size in large-scale genomics // Nature Reviews Genetics 6: 699–708 (2005).

Первые два миллиарда лет жизни на Земле

Arndt, N., and E. Nisbet Processes on the young Еarth and the habitats of early life // Annual Reviews Earth and Planetary Sciences 40: 521–549 (2012).

Hazen, R. The Story of Earth: The First 4,5 Billion Years, from Stardust to Living Planet. Viking, New York (2014).

Knoll, A. Life on a Young Planet: The First Three Billion Years of Evolution on Earth. Princeton University Press, Princeton (2003).

Rutherford, A. Creation: The Origin of Life / The Future of Life. Viking Press, London (2013).

Zahnle, K., Arndt, N., Cockell, C., Halliday, A., Nisbet, E., Selsis, F., and N. H. Sleep Emergence of a habitable planet // Space Science Reviews 129: 35–78 (2007).

Появление кислорода

Butterfield, N. J. Oxygen, animals and oceanic ventilation: an alternative view // Geobiology 7: 1–7 (2009).

Canfield, D. E. Oxygen: A Four Billion Year History. Princeton University Press, Princeton (2014).

Catling, D. C., Glein, C. R., Zahnle, K. J., and C. P. Mckay Why O2 is required by complex life on habitable planets and the concept of planetary “oxygenation time” // Astrobiology 5: 415–438 (2005).

Holland, H. D. The oxygenation of the atmosphere and oceans // Phil. Trans. R. Soc. B 361: 903–915 (2006).

Lane, N. Life’s a gas // New Scientist 2746: 36–39 (2010).

Lane, N. Oxygen: The Molecule that Made the World. Oxford University Press, Oxford (2002).

Shields-Zhou, G., and L. Och The case for a Neoproterozoic oxygenation event: Geochemical evidence and biological consequences // GSA Today 21: 4–11 (2011).

Предположения на основе гипотезы серийных эндосимбиозов

Archibald, J. M. Origin of eukaryotic cells: 40 years on // Symbiosis 54: 69–86 (2011).

Margulis, L. Genetic and evolutionary consequences of symbiosis // Experimental Parasitology 39: 277–349 (1976).

O’Malley, M. The first eukaryote cell: an unfinished history of contestation // Studies in History and Philosophy of Biological and Biomedical Sciences 41: 212–224 (2010).

Архезои

Cavalier-Smith, T. Archaebacteria and archezoa // Nature 339: 100–101 (1989).

Cavalier-Smith, T. Predation and eukaryotic origins: A coevolutionary perspective // International Journal of Biochemistry and Cell Biology 41: 307–332 (2009).

Giezen, M. van der Hydrogenosomes and mitosomes: Conservation and evolution of functions // Journal of Eukaryotic Microbiology 56: 221–231 (2009).

Henze, K., and W. Martin Essence of mitochondria // Nature 426: 127–128 (2003).

Martin, W. F., and M. Müller Origin of Mitochondria and Hydrogenosomes. Springer, Heidelberg (2007).

Tielens, A. G. M., Rotte, C., Hellemond, J. J., and W. Martin Mitochondria as we don’t know them // Trends in Biochemical Sciences 27: 564–572 (2002).

Yong, E. The unique merger that made you (and ewe and yew) // Nautilus 17: Sept 4 (2014).

Супергруппы эукариот

Baldauf, S. L., Roger, A. J., Wenk-Siefert, I., and W. F. Doolittle A kingdom-level phylogeny of eukaryotes based on combined protein data // Science 290: 972–977 (2000).

Hampl, V., Huga, L., Leigh, J. W., Dacks, J. B., Lang, B. F., Simpson, A. G. B., and A. J. Roger Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups” // Proceedings National Academy Sciences USA 106: 3859–3864 (2009).

Keeling, P. J., Burger, G., Durnford, D. G., Lang, B. F., Lee, R. W., Pearlman, R. E., Roger, A. J., and M. W. Grey The Tree of eukaryotes // Trends in Ecology and Evolution 20: 670–676 (2005).

Последний общий предок эукариот

Embley T. M., and W. Martin Eukaryotic evolution, changes and challenges // Nature 440: 623–630 (2006).